I put #40 in the chart long ago because of my 74 Cb550 with 022a carbs. I got it in 1975 and it had 1500 miles on it (Wrecked). It has #40 in it for the slow jet. Every other 550 carb (with that style of carbs) has had #38 in it.
It isn't likely very critical, and I suspect Keihin had a large stock of #40 left over from Cb500 production and just used them up until they either got the right parts or ran out of the #40s.
I would now assume that #38 is the correct pilot jet for the stock 022a carbs.
Also, since I made that chart in the FAQ. Someone on this forum posted (below) from the pages of a little booklet for Honda Mechs.
With pods and an exhaust change, none of the stock carb internal settings will apply. As the carbs cannot adapt automatically to the back pressure changing cylinder demands, and the pods direct change to the carb throat vacuum level pulling fuel from the jets.
Cheers,