Did you anneal the gasket - yourself - prior to installation?
Sometimes they can be pretty stiff when you take them out of the box, it's my opinion that our bike's puny head studs are barely adequate to provide enough clamping force for a decent seal as is.
A dead-soft copper gasket should conform to every little imperfection, and being down only .002" at the sleeve isn't that much, considering that they squish over and around "O" ringed sleeves while also making a leak-proof oil passage seal.
As far as worrying about a micro finish on the head/deck surface, I have seen a correctly prepped gasket (torqued to 22 ft-lbs on a 750) conform to, and even embed itself into even a very rough, poorly flycut finish. A slightly rough surface provides a better gasket 'bite' than a mirror finish.
I even have a much-used Accutronix copper head gasket on a stock 750 motor that has never leaked, I used copper coat and annealed it just prior to install. I heat it red hot with the torch, then drop it strait into a tub of cold water. It is almost scary soft when lifting it out.
I've used copper head gaskets on all of my big bores - and I damn sure refuse to accept ANY weeps or seeps on my turbobike!