You can drill old CB rotors till your blue in the face. Your shop just isn't familiar. But to your question. Many have lamented on the weak disc brakes of the 500/550.
You can improve the feel especially over rubber lines that are 10+ years old with stainless braided line and unless you want to stay OEM you should. You can experiemtn with pad makeup, but I'm not convinced that on the OEM rotors anything works better than OEM.
But to actually INCREASE the braking force you must increase the force coming out of the master cylinder. That is the point of origin of braking force. Everything else including dual discs, improves feel, fade resistance, stability, but does not increase the actual bottom line force.
And/or you must change the braking material of the rotor itself. As you have found there is not much available for the 500/550. EBC makes a rotor for some, but not all, models of the CB750 which is advertised to increase braking by 15%.
Honda and others use stainless steel rotors as they look good and don't rust. Cast iron is the best material but rusts quickly and looks terrible in the showroom. But no holds barred sport bikes like some Ducatis and custom race bikes use cast iron as they don't care what it looks like. My FJR has a cast iron alloy and will rust up if it sits too long.
I've always wondered what putting a dual disc master cylinder on a single disc would feel like.
That's what I would do if I were you (experiment) and what i intend to do on my next project.