Any exhaust system for a CB500/550 will connect up to the exhaust ports with equal aplomb. (replace the crush gaskets).
Aftermarket types will need bracketry to fit between the different mount points of the frame and muffler, whose locations vary with the model.
The centerstand up stop is located on your current mufflers. If you don't want centerstand to chain contact, a bump stop will have to be fabricated for that purpose.
The CB500/550 K3 model has an exhaust system unique for that model. It's flow and restriction characteristics are also unique. And, the carburetors are jetted to perform properly with those characteristics. If you change the mufflers to another type, be aware that the carburetor jetting/tuning will no longer match Honda book settings. If the muffler manufacturer doesn't specify the new carburetor settings, it is up to you or your mechanic to discover what the new correct settings are for you new mufflers. Each carburetor has at least three and likely four adjustments to make for mixture control, corresponding to idle, part open, midrange, a wide open throttle settings.
Almost all aftermarket suppliers tout lower exhaust restriction than the stock mufflers, leading you to believe your engine will make more power. It can, particularly at wide open throttle in the RPMs near red line. A street bike spends little time at those RPMs. Very, very few explain carburetion setting changes necessary to restore street performance at normal driving speeds.
If your current mufflers have holes and are leaking exhaust gasses, the restriction characteristics are already changed from stock. This may explain the flat spots or engine hesitation to throttle changes you have recently been complaining about. Expect more and more pronounced behavior of this type with replacement mufflers.
I have brazed patches over holes in stock muffler systems. Wasn't pretty, but, it worked. I did notice some of the engine performance issues went away. And, the carburetor adjustments worked best when restored to Honda book values.
Best of luck!