on mine the one plug kept going bad, was really rich, after 40 miles it would stutter bad, my other 3 were brown, I put a new plug in it, its was fine, i think on mine the plug cap was bad. But i had already ordered new coils and wires a week before it was doing this. Come to find out my wires were spliced with extra wire on 2 and 3 , and the 1 and 4 wires were original.
i would replace your plugs, check valves again, set your timing and go for a ride, see if your stutter is gone.