OK I see what's going on. You're swingarm angle placement is being dictated by clearance for the tire? Maybe it would be better to angle the tubes you've added a couple degrees AND add longer shocks. It looks like you're running into the exact same problem Squirley did with his.
If I remember correctly, I think his frame rear section was kicked up just a little more than yours, but maybe it's just the pic. He used those CB900/1100 (?) shocks that are like 14.5", and even then he had to use some kind of bracket to lengthen its connection. I think using the brackets may have been avoided by adding some kind of upward curve to the rear hoop. I wanna say it's in the last couple pages of his build.
Keep in mind this is totally ignoring the swingarm's available arc before it starts hitting other pieces. If it wasn't for the hoop, you'd be able to just tack your top shock mounts in almost the same place and be in the game, no?