Do you think aligning the front forks may help? As per:
You might need to align the front forks, but first, check to make sure you got the front axle & nut on the right way (some other post here noted they got the nut on the wrong side, an old error I've even forgotten, but common...). Also, make sure the axle caps (on the ends of the forks) are installed properly. They should be flat and even at the back side with a (parallel) gap on the front side. Tighten the rear sides first, then the fronts. The caps are DIRECTIONAL: they have a HI and LOW side to them. The gap side must be in front.
To align: loosen the lower fork clamp (triple tree) bolts just enough to be loose, then finger-tighten them. The top ones should be tight, as per normal, so the tubes don't slip up during this next part. Loosen the bolts to finger-tight on one side of the fork brace (usually the non-brake side is easier). The next step is easier with a friend standing by with a wrench: get on the bike, on both wheels, and pump hard down & up several times on the front end. Try to hold it down on the last "bounce" (just don't let it all the way up), then have your friend tighten the lower triple tree bolts. Then let up and tighten the fork brace. This relieves little stresses all over, providing your tubes are straight.
Could it be that the disk may be slightly out of align?
Cliff.