HI there, I'm a professional bass player, and yes, most Fenders have a dead spot. I remember those plates.......haven't seen them in a long time....The dead spot is usually the D note on the G string (7th fret). I just don't use it too much, especially if you need sustain. Play it up higher on the D string....I have to say, I own a lot of basses, and even with that problem, it's still the best one I have (63 Precision), and the most recorded bass of all time. Those metal plates (maybe they were called fatheads?) really just move the problem around, and I think they change the sound a bit too, although a dead E flat would be better!
Almost every bass I own has a weird little area where it's kinda #$%*ty, or not perfect, some worse than others. I found the old Mexican and Korean Fenders were pretty rough. I had a Mexican Jazz Squire that seemed like it had a hundred dead spots on it.
Sometimes I think you can move the dead spot around by just putting a capo on the headstock. (not across any strings, just clamped to the headstock)
So in short, it's probably not the relief on the neck, or the set-up.....
But I have to say it's like a lot of things in life, you just have to work around it. In motorcycle terms it's like saying, "My carbs seem perfect, except right at 3,500, it sputters for just a second" the answer is, just don't leave it there for long! Good luck,John!