I tried to understand your explanation of how you wired this but my head hurts and it still doesn't make sense.
Kandrtech is right. One wire from each coil goes to the black harness wire. The other wires from the coils connect, one each, to the wires from the transistor ignition. There's no looping.
That should get you a spark.
It might not actually run though, the coil wires may be reversed so if not try swapping around the wires from the ignition box to the coils.
I'm not sure about the BB system but most ignition boxes connect this way.