Just came into this thread..
you missed 2 major points,
Basic alignment & after fall alignment, put bike on c-stand or have someme sit on bike. Stand over front wheel facing bike. Grip wheel with knees, then push handlebars the direction it needs, to go..keep checking.. You need to do this every time a bike gets dropped or when assembling forks.
I am surprised how few remember this from bicycles..
My son learned it when he was 5.
When assembling the front end, do this simple check for tube straightness. With axle in and no weight on front end, rotate tube in triple trees, observe position on axle, often it will move in and out slightly. If there is a slight bend rotate to position towards front..always. Do this with both forks and aim to the front if there is a slight bend. (Or pull them apart & deal with that issue)
While what Hondaman said about out of tolerance trees, I would bet it is more likely the tubes.
Another issue is the trees could be bent, I can tell you how to fix them.
Another method of alignment & checking, but it will not work with gaiters & headlight ears. Simply eyeball the tubes for parralel from the side.. quicky, easy & simple..
I once had a 350CL. One day I had a particularily nasty endo on that bike, they were bent after that
. like one of the ribs on my back, after I landed on & pulled a rock out of the ground(with my back). I turned them to the front and next time I hit something, they got almost straight!!