The rattle may well be trans gear clack or the clutch basket. If it changes sound when you pull in the clutch, that's probably it.
Carb sync and peaking the tune up items can affect this, too. You need to have every cylinder making the same power pulses at idle or the crankshaft changes speed, speeding up a bit then slowing down, which changes which side of the gear teeth are engaged in the trans. Clack-clack unless all cylinder fire evenly.
Cheers,