The pods, have no V stack to them like the stock air box does, also the way the stock air box was designed it restricted the amount of air flow to even things out, with the idle jets/air screws. With just the pod's you are sucking way to much air, and I don't see how the #40 idle jet will work.
The reason it is idling up and staying is it is sucking air, running lean, and will run too hot, mine you can choke 3/4 of the way, and it will idle down, but if you rev to 3k rpm (no choke) it will stay there. I covered the pods with foil tape completely, except for about a 1" sq on the bottom sides just to test restricting the air flow, and it would slowly climb back down on it's own. Still getting to much air flow. I have an extra set of slides, and I am grinding them down to test closing the air cutaway, and see how this helps, also need to try some 42 idle jets. My engine is not stock, but the problem is the same as you are having. POD's Suck! I don't know how some guys have them, you have to even things out with the amount of air they take in, you have to dump enough fuel.
I am no expert by any means, but this is what I have found with my experience in the past month of dealing with this issue.
Good luck man