Corey -- Here's what I learned about jets for PD carbs, being a total newbie. The main jet proper is just a tiny thing screwed into the emulsifier tube. Your picture of clogged jets shows the jets and tubes still screwed together. If you need to replace your main jets, very carefully unscrew the jet (the slotted part on the tip) from the tube. That's the replaceable part. Be careful of the tube -- they're hard to find. A 7mm wrench fits the flats on mine.
Slow jets are the brass cylinders between the main jet in the middle and the external air screw. On my carbs, the originals were a press-fit, but as far as I know, those are no longer made. The threaded replacements will fit, however, by carefully screwing them in. Use just enough pressure to get them to seat all the way down, and use a screwdriver that fits the slot (a hollow-ground gunsmith's screwdriver is ideal). If they are loose, some Loctite may help. Just don't force them and risk cracking the carb body.
Man, I'm glad you got rid of those apes! Looking forward to seeing your Dad's bike when it's done!