Number 3 carb has the accelerator pump as part of it's moulding on the 650, if the skirt is ripped like one I had on a set of carbs then it will do jack so if you ever have to remove the carbs again undo the 3 small screws that hold it on and check that it hasn't hardened and is unserviceable.
Also the trick with the air filter cover off will feed more air to your carbs, use some big penny washers to hold the filter in place and just leave the real filter cover on your work bench, ride bike and see if it helps.
A clogged filter will give you bad acceleration too, they sometimes look great but are clogged with crap and a new one every now and then is a good idea.
I would definitely check the condition of your advancer mechanism though, I had all of these problems with my 650 when I got it so curing one didn't fix it and I had to keep looking until I had done the lot, if you don't want to upset your timing just mark the plate with a sharpie pen and the casing as well, when you finished cleaning up the advancer you can just stick the timing plate back in same spot....good luck...Hush.