I am guessing we popped the regulator or rectifier by running with a dead battery (IE ran the alternator full on and cooked it?)
I have a spare regulator from another 550 but it is a solid state unit with AL fins on it and a 4 wire pigtail....is there a way I can use this?
Probably the rectifier and possibly the wiring, too. Look for melted insulation.
A regulator with 4 wires is non standard. However, if you describe how it was hooked up in the other 550 (wire color interconnectivity), or post a picture of it, we might be able to determine if it can be properly adapted. Seems unlikely the regulator would die from a dead battery, though.
Might want to check the electrics FAQ for diagnosing your failure. But, you'll need a fully charged known good battery for troubelshooting your charging system. A Voltmeter will help a great deal, too.