Well, from reading your posts so far, the worst is: bent valves from timing chain improperly installed, scored cylinders from fuel wash and lack of oil, seized engine from oil pump not functioning, advancing flame front and consuming fire from carb issues, and lastly, you could shoot a flaming packing peanut out and ignite a pile of rags and burn the entire shop down. That being said, you seem reckless, careless, and somewhat incompetent. You have disregarded all suggestions that others have made. I get that, we all have to start somewhere. I would ask that you remain on the forum, listen carefully, and do what people here suggest. At least until you have some experience under your belt, then you can go your own way with some sense of care for your machine.
Jesus H, King...... THAT'S tough love! I wouldn't have gone quite that far..
ArtfOrm, I sympathize with what you're going through, and just so you understand people's reaction to your problem, you've made some choices on the bike that are outside your experience level, and possibly violate various laws of physics, chemistry, fluidynamics, maybe even aerodynamics (Haven't seen your bodywork yet).
I know you want someone to say "hey, that should all be totally do-able.. pour some mystery oil in the gas tank,stare at it for 20 mins and it'll purr like a kitten".
but there are far too many variables here, and the combined experience here still can't predict what it will take to make it run with all those changes.
Saying you should get it closer to stock is not us trying to stunt your creativity, just trying to get some known data out of a ton of unknowns. You haven't even said what model CR you're running (probably3025s), but you have to try to appreciate what it says to all the old timers when you have $800 worth of carbs on an engine that can only run worse for the 'upgrade'....
Unless I miss my guess, you probably bought all that stuff from carpy's.. as he seems to be one of the only in-stock sources for 3035s, I'd call and tell them exactly what combination you're running, and ask for some baseline jet suggestions .