No I haven't shimmed the needles.
But, I'm curious why you left out critical information, namely 649 set up carbs and the presence of the air filter inlet restrictor? That restrictor is going to effect all the mixture delivery devices in the carbs. And, as far as I know, no one outside of the Netherlands, and perhaps Germany, has any experience with those CB500 modifications.
You are quite right not to apply American Honda specs to that set up, imo.
But, I seem to recall you praising how well your bike ran with that inlet restrictor. What is it exactly you are trying to "fix"?
I suppose I really shouldn't speak for Hondaman, but I think it unlikely that he has direct experience with 649 carbs and that inlet restrictor on a CB500. And by the way, that inlet restrictor is precisely why the 649a slide needles are lower than the 627b set up. I'd not be surprised if the needle taper angle, or diameter was different, too.
But, I fully admit at not having any direct experience with the 649a Carbs with an air filter inlet restrictor. Most of my info on these has come from you. But, I don't see why the physics would be different in the Netherlands/Germany.
Cheers,