Any difference in volumetric efficiency can contribute to exhaust temp differences. (As well as mixture ratio)
Are the tappet clearances exactly the same?
Are the cam lobes of equal profile/timing?
Compression identical among cylinders?
If yes to all above, then lean the idle mix on the colder cylinder and check for effect.
Of course, if it is already leaner the the others (exhaust gas analyzer), then maybe go richer.
For the instrument, check out the spot size being measured. (It is NOT the laser dot, that's just an aim pointing device.) Also, distance changes the spot size.
(I'm guessing about the instrument details, since you didn't specify.) A "Wrench", could be made of iron, steel, plastic, brass, or silly putty. They would have different capabilities/functional considerations.
Cheers,