First off, welcome!
+1 on giving it a full "3000 mile tuneup". Then you will know exactly where you are at. If you have stock plug wires, they are attached to the coils and cannot be changed, and most likely won't need replacement. A good suggestion is to replace the plug caps, about $2 from your local Honda dealer (or check 'em with an ohmmeter) And clip off a quarter inch of plug wire when you o ti ensure a good connection.
Have fun!