The real problem is this:
QUOTE: " Stock 77 airbox "
The stock air box is VERY restrictive.
You need to get the 1976 air box. Now we know why it rich.
Perhaps a remedial course in reading comprehension is needed.
This thread is about the CB550.
For the 550, the air box is the same for all models. And, it is NOT "very restrictive". It most certainly has design elements that are not fully understood. And, that goes for the CB750 air box design, as well.
For the OP,
Yes, do use smaller main jets with that higher pressure exhaust. In fact, the pilot system will need leaning, as well as the slide needle adjustment.
I'll ask why you can't use the 77-78 PD46 carbs? Although they have a different venturi shape, they used a #90 main jet. But, they were tailored for just the configuration you currently have.
I agree that for your current carbs, it's a big jump between #80 and #98.
If you continue on current path, you may have to buy #80 jets and ream them larger to the final size your set up requires.
Cheers,
P.S. Be careful about some "advice" being offered in this forum. The quality/accuracy has taken a dip of late, imo.