Well, I had some time to look at the bike again yesterday and before I could get to the point where I could be 100% sure that the problem was isolated to the ignition coils, I hit a block on the list of diagnosis.
I pulled the new plugs to look at them to see how they were firing. The old #1 & 4 were sooty and black, and when I pulled the new ones, #4 was fine, but #1 had immediately coated over, so I decided to pull float bowls from #1 & 4 to have a look see, and when I pulled #1, it was overflowing bad.
I'm now looking through the archives in SOHC for repair options, but feel free to comment.