I also want to mention from before .. Before the bike died it sounded like keys were rattling in the engine.. So I Tightened the can chain adjuster bolt.. I ended up snapping the end off and its stuck in the frame I rode it around while that was like that and had no problems until the night it just stopped working.
The "rattling" could be 1 of 3 things commonly: carburetors that need to be synchronized (vacuum is the best method); cam chain (generally dealt with during a 3k service) or exhaust leaks at the head.
So you've metoned 2 of 3 possible symptoms; smoky at the exhaust
and a snapped adjuster bolt.... Let's come back to this in a moment.
You got the bike running, on all 4 cylinders? Did you notice that all 4 pipes were getting equally hot?
Can you snap a picture of the snapped adjuster bolt?
Where is the smoke emanating for in the exhaust? At the head or the tailpipe? Color?