Unsynched carbs can make idle speeds unpredictable. But, I don't normally associate that with a warm up issue. If you know your carbs aren't synched properly, then clearly that needs to be done. But, note that synching carbs is nearly last to do. All tune up items should be done first; plugs, points, timing, tappets, cam chain adjust, air fliter... The pilot screws (and, perhaps, other mixture settings) are set as the very last item interactive with the idle speed knob.
FYI, the book values for pilot screw settings are only applicable for bikes with stock exhaust and induction components.