Easy answer, yes you can make pod filters "work" with the 4-4 exhaust. You will just have to mess with the jetting quite a bit (and understand what jet effects what throttle position) My opinion, which is not from an elitist "stock is the only way to go" viewpoint, is if you ride the bike alot go find a good condition airbox and be done with it.
I've ran both. My last cb750 had pod filters on it, from cheap to k&N. I understand the jetting, I tested and tested some more and got it to run good. But results were still inconsistent, wind, weather whatever. My current cb750 has factory airbox with k&N filter. Yes, It does not have to look of pods, but for a daily ridden bike I cannot tell you how much better it feels. Easy startup, consistent idle, no really unexpected "dead" spots through acceleration.
Choice is yours, and if only a part time ride and you are more concerned with looks you can get it to run ok with pods and help from some people on here.