The voltages you post indicate the bike is charging, perhaps lower than optimal, but charging. What you have not indicated is what changes from stock have you made to the bike? Especially the headlight or other electrical components?
Also, fully charge the battery overnight. Let it rest off the charger for a mimunim of 2 hours. Measure its voltage. Then, compare that voltage with the bike running at idle, 2k revs, 4k revs, and 5k revs. You may find that your battery is bad, or that you simply need to perform some maintenance on your charing system wire harness and grounds.
"I've since replaced the old charging rotor with a new aftermarket one, along with a new rectifier unit. But still with the same result."
I'm going to assume you meant to say "replace the stock regulator/rectifier" with an aftermarket unit. Yes? If so, which do you buy?