Starting to get paint on some parts. I'm all about DIY so I use wire brushes (on a drill for the heavy removal, on a Dremel for light removal and tight spaces) followed by a good de-grease until shop towel with mineral spirits stays clean. I use Rustoleum Stops Rust primer and satin black. Primer is Rusty Metal or Clean Metal depending on the state of the part being painted. I've used this combination on the chassis and floor of my homebuilt car which has been on the road since 2006 and it's stood up brilliantly. Have also used it on my RD400 and it looks correct (to me) and, again, has lasted well.
If you're wondering why a SOHC devotee has an RD400, there were two distinct camps in the UK when I was riding my 400-4 through the late 70s and early 80s. The Honda 4-stroke camp (400-4, 400T and 250/400N Superdream) and "the rest" which were all 2-strokes: Yamaha RD250/400 and 250/350LC, Suzuki GT250/380 and X7, Kawasaki KH250/400. So, when I decided to get another 70s bike about 10 years ago, I thought I'd see what the "competition" was like! I found someone who was selling all their RD stuff so I got one working bike, another in boxes and a ton of parts as a "job lot"! I cherry-picked all the best parts to make one good bike and sold the other. Hopefully soon I'll be able to make a side-by-side comparison test with the 400-4!