Honda didn't "finish" the welds on the head tube for good reason... All frames flex.... The area that are not welded are there to allow flex.... If they are welded 100% then you've given the frame no where to release the energy. Usually resulting in cracks at the weakest area(tubes)
All very true. But to complete your statement "...area not welded are there to allow flex", its also there as to weld it would've cost more with no benefit at the production level, the extra cost could not be recouped in additional price.
Too much flex was the result of Jap bikes in general scrimping on things like welding up the headstock, opting to pin them with rivets instead. The magazines of the day lamented the "flexi-flyer" frames and anecdotally many riders were killed because of too much flex being left in the frames.
Honda stopped short of 100% or 80% or 60% for production cost reasons, not just design reasons. So reasonable amounts of additional welding will strengthen the frame without taxing it. As the many racers do, without cracking it.