Going to 3mm over will require a special head gasket, usually copper ($$).
It will also eliminate any future possibility of boring, as the cylinder walls will be too thin after that point.
So think about it, you may be painting yourself into a corner, so to speak........
The plastic/nylon (whatever they are) wrist pin "clips" are a non-issue, widely used these days.
If you don't feel good about them, then the wire clips are still available from Honda for cheap.