Yep mine has them too, nothing to worry about  
I believe those are casting 'cutouts'(if that's the correct word.. 
)which serve as kind of drains for when water gets on top of your cylinder head.. I think
Phew!
Piston work tonight.  First, pictures of the sides as you all requested.  This is pre-cleaning attempt.
1(a)

1(b)

2(a)

2(b)

3(a)

3(b)

4(a)

4(b)

As you can see, the most notable signs of blow by are on pistons 2 (side b) and 3 (side b).  To my eye, the walls looks relatively good.  Next up I decided to start trying to remove some of that gunk off the piston heads.  I did a 20 minute soak in the chem-dip and then went at it with a disk similar to the one below.

1

2

3

4

They certainly are shinier than they were...someone with more knowledge will need to tell me if I a) ruined these, or b) did an okay job.  Either are totally possible.  I decided removing the gunk HAD to be better than leaving it on there.  Did I go too far?  Did I ruin these four pistons?  I wasn't able to get at the right angle to remove the gunk in the valve clearance cut outs on the piston.  With a Dremel I should be able too but didn't want to go much further than I already have.
One thing I did ruin, the rings on #2

I attempted to measure them but I think I may have done a horrible job.  I took my feeler guages and went around the top of each ring seeing which would fit in.  Factory said .006".  For the most part this was true.  Sometimes only a .004" would fit.  On one or two occasions I was able to fit .008".  Is the factory spec of .006 a max or does it hold true both ways?  Is being able to fit only a .004 in some locations a bad thing?  I also may have been wielding the tool incorrectly.  I will have to redo all of these measurements, but thought I'd share to gather some more info.