Op hit a jackpot.
Fwiw, keep it all.
Sink your budget into the chassis.
What changes/modifications to the chassis would you recommend?
Good motors need good brakes.
Good brakes need good suspensions.
Thats really all there is to it.
Even if you don't convert the swingarm and forks to something radical. Replacing the guts of stock forks with racetech and progressive kits will improve the functionality up front. Adapted brake calipers and rotors are smart update too.
Twin shock setups are solid. Any quality rear shock will do what you want of it. There are some posts here about getting a slightly longer wheelbase with a cb550 swingarm swap. Iirc.
And since you got yourself a monster motor. Might as well get the powerarc optical ignition pre-programmed from cycleX. Worth every penny.
There are some ways to gusset and cross brace frames. Did some of that for the xs750 with the help of a buddy. I never rode the bike pre-rebuild. But my exhaust fabricator said my xs felt tighter than the same year stock xs he had in his dealership. It was a fun exercise in theory and didn't require too many fabrication tools. Could be worth it with a punched out hopped up rig like yours. Something to consider.
Oh, and don't underestimate the benefit of a cnc'd triple tree setup with a fork brace.