G'Day Dids. I have a few jobs for you.
1 Complete the small diagram that you sent on page 5 of this topic. You are almost there. We need to know where each colour wire goes to. If you were to mark the three leads of the transistor/switch in some way - 1,2,3 would that would be ok. Then join the wires to these markings. Also please check that there are no other components mounted on the unit. So, at the momeny we have a capacitor connected across blk/wh and green and three legs from a transsistor/switch which we need to know how it is connected. One leg will go to yellow, one leg will go to green, and the other

2 Lets try and check out the pulse units. First turn off the main switch and kill switch. disconnect the spark units. Select ohms on your multimeter and measure the resistance of each pulse coil. There will be two yellow wires going to one pulse coil and two blue wires going to the other. Note the resistance of each. Now measure from one wire of each pulse coil to ground on the high ohms scale of your multimeter. This should be a high number and a measure of the insulation resistance of the pulse coils and their connecting wires. Select volts on your multimeter and connect the meter across one of the pulse coils. Turn on the main switch but not the kill switch and crank over the motor. The multimeter should flicker if these are passive units but if they require power from the spark units then you will see nothing. Repeat the test on the other pulse coil. Note readings.
3 Lets see if we can do something with the units connected. Remove spark plugs and connect to their leads and leave resting on the engine or frame. Reconnect the spark units. Turn ON main switch and kill switch. Now turn OFF the kill switch. Repeat the turning ON and OFF of the kill switch. Do you get a spark when turning the kill switch to off. Note results. Leave kill switch in the OFF position.
4 I will like to know how much current the coils are drawing when the kill switch is ON and the motor stopped. To do this disconnect the blk/wh wires that go to the primary side of the coils You will also need a multimeter that has a 0-10amp DC scale. Seect this scale and connect the meter between the blk/wh wire coming from the kill switch and the blk/wh wire going to the coil. This will put the meter in series with the primary of one of the coils, Turn ON the kill switch and note the reading. Repeat this test for the other coil and note the reading. While you have the meter connected crank the motor. You should see the amp meter reading change and the plugs for that coil fire. Repeat with the other coil.
5 Check all of your connections and earths again.
6 Check out the rectifier. Just in case you have a partial failure there. You may need a hand to do this.
Dids , I have given you a fair bit of work to do. It would be good if you could get some help from an electrical type person. He doesn't have to be an auto electrician - although that would be good - just some one that can use a meter and help you with the drawing. Just one other important thing. Make sure that your wiring is as per the circuit diagram for your bike. I have been using the one that I down loaded from this site.
Some other thoughts. I believe that the 3 legged devices in the spark units that we have been calling transistors are more than that. They are probably a special device incorporating circuitry to handle protection as well as the switching of the primary current to the coils. The capacitor across the 12v and ground may only be for noise suppression and if that is the case the motor should run without it.
Go for it!! Pat