Ok then... Motor seems to be better. I was able to get everything back together. Clutch took about 30 minutes to work back in. Just as an FYI for anyone my primary chain is brand new. So, this repair can be done with new chains. Got some oil in the bike and the electrics all hooked back up. I need a new battery but bike starts strong now. Ran for 10 minutes.
Have a couple issues to still work through. I'm not getting a rpm readout on my gauge and have a small oil leak by my filter. Now I'm running through some checks to make sure I've got good oil flow to the top end. Going to pull plugs and check them out.
Here is a video of it starting and running. Youtube embed doesn't seem to be working so here is the link. Would love feedback on how this sounds....
I also got my brake strap made. Thanks to luvmy71 to strap turned out great. I made some changes to my design. I got it painted up and mounted. Brake line runs into and along the back so it is nice and out of the way. I think it turned out great and have great clearance for the disc and and rear tire.