Okay if I am rolling the bike back and forth, I cannot change gears, it's incredibly hard. But if the motor is running I can shift okay through them.
I have tried the clutch adjusting nut in a ton of different settings but still get the same effect. No matter what gear I put it in, the motor runs, BUT I can tell that the gears are KIND OF engaged as the motor runs slightly harder in the upper gears.
Sounds like it could be more of a clutch issue or something else? I feel like I am in over my head with this
This is interesting! (?)
A broken gear (Final Drive) could do this. It's number 14 in the image below. But, for that, I would expect you would find bits of metal in the oil pan, at least, because it would have had to shear off the splines.
An over-center clutch could also do it, which seems more likely. This can happen if, for instance, a post-1976 lifter was used in a pre-1975 clutch cover (different lengths), or if the cover used is not the right year for the lifter used, that sort of thing. This can at least be tested by turning the clutch adjust screw all the way out (CCW) until it stops, to disengage the clutch hub altogether. Then the clutch lever should be very soft to pull in, like one small finger's grunt.
Or, if the clutch is not assembled properly, like the hub is not seated into the splines so it sits against the plates, the plates will never engage. But when this happens and the little bolts are all tightened, it usually breaks the hub.