I'll have to mock it up again on my spare frames, but I remember there being some interference between footrest and brake pedal. I remember I couldn't get the stock 400F brake pedal assembly to fit on the stock 350F frame with either the 350F or 400F footrests.
One option would be to use the stock 350F brake pedal with the 350F footrests. Another would be to relocate the brake pedal pivot and then use the 400F footrests and 400F brake pedal. Alternatively, I think you can use the 400F footrests with a shortened 350F brake pedal.
If you are into the handling of the bike, then I really recommend using the 400F footrests as they give quite a bit more cornering clearance. I regularly drag my 4-2 Jardine exhaust on the ground on my 350F, and I'm awfully close to dragging the footrests when I do that. With a better exhaust that offers more clearance, I'm pretty sure my footrests would touch down on hard turns.
Camelman