I think I know what your experiencing. I am also doing the GL front end swap and wanted the DID rim in the rear. All of my research taught me the following...
The GL rim is 17" compared to the stock 18", which means the spokes will need to come off the hub at a steeper angle to get to the center of the smaller diameter rim. This would explain what your seeing in the images you posted above.
From what I've read, people do one of the following...bend and force the spokes and run it like that (note that I have yet to hear anyone mention actual spoke failure, but there are plenty of recommendations against it), second I read about people having the spoke flange area machined to allow the spokes that steeper angle, and finally I found that a CB750A rear wheel has a chain drive CB hub, but runs the same 17" DID rim off the GL. I now own both and visually it does look machined at a steeper angle, but all other features are identical. Using my existing sprocket, it is a direct swap on my 73' (I think the CB750A's had a different drive chain size).
I'm sorry I can't point your at any of the posts or sites I have culled this info from, but it has been a lot of searching and reading. I can post images laterite anyone is interested, I just have nothing at the moment.
I hope it helps.