Update Sept. 10th - I think we are getting closer to getting this #3 issue solved. I removed the carbs again today. Keep in mind my dealer used his expensive ultra sonic cleaner on my carbs in exchange for some venison. I figure all was well, but should have looked closer. Today I noted the small hole at the bottom of the carb plate was plugged. This would be the very small hole located north of the needle valve hole (see pic). Plugged solid. I cleared that up. Then wanted to take a closer look at the intake rubber and was pretty surprised at what I found (see pic). Could not see the cut until I squeezed the intake then it showed up REAL well.
Can not get the KO intake from the dealer so I used one I had from a K4 with 5,000 miles on it. Checked it real close. It is thicker than the KO intake, but the fit was fine. So I have it all buttoned back up, but I can not test it as I have my tach seal out waiting for a replacement. That should be here tomorrow. I will let you know the outcome of the test...fingers crossed. I think either one of these issues could have caused this...but add them both and you have a poor #3 cylinder. I also rechecked the compression which was fine. I will let you know more after the test ride soon.