Say, you may have already thought of this, but once you have the top end off of the motor, you need to invert it in order to unbolt the crankcase halves, and then lift the bottom of the case off, leaving most of the internals in the top half of the crankcase.
I've never seen anyone design an engine stand adapter that allows this to happen, since most people support the motor from the lower mounting bolts. On the bench you just rest the cases at an angle supported by the upper rear mounting bolt boss at the rear, and the top of the studs at the front. This actually puts things at a convenient angle for working on, too, imho.
Anyway, i do like your bracket design, you could probably run the motor on the stand with those things and do your initial setup and re-torquing on the stand before dropping the motor back into the frame. Wish I had access to a waterjet!
mystic_1