It is pretty much a stock size rear tire.  Well as close as you can get converting to metric sizing.  There is a lot of clearance.  I was worried a bit once I put the tail light assembly on which holds the license plate.  It looked like it might be a bit close.  However, I hopped up and down with everything I had to compress the rear end and the plate never gets closer than 2" inches to the rear tire.  Add in that I have the shocks at their lowest setting so when I adjust them to raise the back end some I will gain a little more clearance.  This is without a doubt the smoothest rolling bike I have.  When pushing it around it feels like it just floats.
However, I ran into a huge issue yesterday.  I started hooking up all of the wiring yesterday and adapting the controls I am going to use to attach to the stock wiring.  I was mostly done when I came to a show stopper.  When I dropped in the battery I noticed the problem.  I can't get the seat on with the battery in.  The bracket I welded in to anchor the front of the seat sits just in front of the battery.  With the battery installed I need about an inch of clearance for the seat to be able to slide in.  After a lot of thought I think I can get a smaller than stock size battery.  I currently have a Scorpion YT12C (180cca, 12a/h).  I looked at the lithium batteries, but great googly moogly are they expensive.  So I started looking for a smaller dimensioned AGM battery.  I found a Scorpion YT9C (130cca, 9 a/h) that should give me 1/16" of clearance at the top.  I will have to cut off the upper front piece of the battery box so that I can attach the ground wire to the battery, but I can live with that.  I will be running an LED headlight that uses 19 amps less than the stocker, no turn signals, and all other lighting is LED so I think I should be good with the a/h rating.
The icing on the cake yesterday was that none of the wiring works.  I have power at the connector in the headlight bucket, but nothing turns on.  Not a light, horn...nothing.  So I think I have a ground issue somewhere.